CONFERENCE CONTRIBUTIONS (2007-2010)

Sergio Ramírez; Hugo Rosales and Oswaldo Trelles (2007); “On-Line distance learning platform”; WEBIST 2007: Web Information Systems and Technologies; Barcelona – España.

Antonio Muñoz; James Perkins; Antonio Pérez; Guillermo Thode; Eduardo R. Bejarano; Oswaldo Trelles; Enrique Viguera (2007); “A web-server for the identification of microRNAs against nucleotide sequences”; Jornadas Internacionales de Ciencias y Tecnologías; Málaga – España; Tánger –Marruecos.

Victoria Martín-Requena;  Antonio Muñoz-Mérida; Gonzalo Claros-Díaz and Oswaldo Trelles (2007); “New improved tool for double-colour gene-expression data processing”; International Workshop on Collaborative Bioinformatics; Torremolinos, Málaga – España.

Ramirez-Boo, M.; Jimenez-Marin, A.; Moreno, A.; Segalés, J.; Fort, M.; Fernandes. T.; Muñoz-Merida, A.; Pérez, A.J.; Trelles-Salazar, O. and Garrido, J.J. (2007); “Gene expression profile of porcine circovirus type 2 infection by microarrays analysis”; International Symposium on Animal Genomics for Animal Health; Paris – France.

Antonio Muñoz, James R. Perkins, Antonio J. Pérez, Guillermo Thode, Eduardo R. Bejarano, Oswaldo Trelles, and Enrique Viguera (2007); “A web-server for the identification of microRNAs against nucleotide sequences”; II International Conference on Science and Technology (JICT 2007); Málaga – España.

Antonio Muñoz, Victoria Martín, Oswaldo Trelles (2007); “Improving data-quality in cDNA microarray experiments”; Scientific Days on Bioinformatics JSB’07, Acta de ‘Scientific Days on Bioinformatics JSB’07; Rabat – Marruecos.

Manolis Tsiknakis, Stelios Sfakianakis,Stefan Ruping, Oswaldo Trelles, Thierry Siestang, Brecht Claerhout and Vassilis Virvilis 82008); “A Semantic Grid Services Architecture in Support of Efficient Knowledge Discovery from Multilevel Clinical and Genomic Datasets”; First International Conference on Health Informatics, HEALTHINF 2008; Funchal, Madeira – Portugal. Published: Proceedings: January 28-31, 2008, Volume 1; Ed. INSTICC – Institute for Systems and Technologies of Information, Control and Communication. ISBN 978-989-8111-16-6.

Sergio Ramírez; Javier Rios, Oliverio Vega and Oswaldo Trelles (2008); “Presential-Like e-learning tool for teaching bioinformatics”, VIII Jornadas de Bioinformática; Valencia – España.

Sergio Ramírez; Johan Karlsson, Maximiliano García, Oswaldo Trelles (2008); “Metadata repositories for web-services and workflows”; VIII Jornadas de Bioinformática; Valencia – España.

Antonio Muñoz, Victoria Martín, Rafael Fernández, Oswaldo Trelles (2008); “pUMA: Leading the data management of genomic Project ESP-SOL”. VIII Jornadas de Bioinformática; Valencia – España.

Javier Ríos, Johan Karlsson, Oswaldo Trelles (2009); “Victoria: navigating to a new style of searching for web-services and workflows”; 17th Intelligent System for Molecular Biology (ISMB) and 8th European Conference on Computational Biology (ECCB); Stockholm – Sweden.

Victoria Martín-Requena, Javier Rios, Maximiliano García, Sergio Ramirez and Oswaldo Trelles (2009); “jORCA: Making the use of bioinformatics web services easier”; 17th Intelligent System for Molecular Biology (ISMB) and 8th European Conference on Computational Biology (ECCB); Stockholm – Sweden.

José Manuel Mateos-Duran; Pjotr Prins; Andrés Rodríguez & Oswaldo Trelles (2009); “Qnorm: A library of parallel methods for gene-expression Q-normalization”; The Bioinformatics Open Source Conference (BOSC); Stockholm – Sweden.

Alfredo Martínez; Paul Gordon; Christoph W. Sensen and Oswaldo Trelles (2009); “Towards closing the gap between user data and standardized input”; Network Tools and Applications in Biology (NETTAB 2009); Catania, Sicily – Italy.

Maximiliano García, Johan Karlsson, Sergio Ramirez and Oswaldo Trelles (2009); “Web Services across an European Biomedical GRID Infrastructure”; Jornadas de Bioinformática; Lisboa,– Portugal.

Elizabet Tamayo; Antonio Muñoz-Mérida and Oswaldo Trelles (2009); “Mixing samples before or after expression analysis determine the final result”; International Conference & Meetings EMBnet-RIBio 2009: Bioinformatics for High Throughput Technologies and the Interface of Bioinformatics and Systems Biology; Mexico.

Muñoz, A.; Tamayo, E.; Fernández, R.; Granell, A. y Trelles O (2009); “Pooling versus individual samples: a comparative analysis”; Tomato Genomics; EU-SOL workshop “New tools for improvement of yield and quality”; Toledo – España.

Gonzales-Plaza, J.J.; Sámchez-Sevilla, J.F.; Muñoz-Mérida A.; Dominguez M.C., Trelles O., Bjelaj A.; De la Rosa R.; Botella M.A., Valpuesta V., Beuzon C.R (2009); “Generación de herramientas bioinformáticas para el estudio del Olivo”; XXXVII Congreso de la Sociedad Española de Genética; Torremolinos – España.

Francisco Amil-Ruiz, Sonia Encinas-Villarejo, Berta de los Santos, Antonio Muñoz- Mérida, José A. Mercado, Oswaldo Trelles, Fernando Pliego-Alfaro, Fernando Romero, Juan Muñoz-Blanco, and José L. Caballero (2009); “Molecular dissection of defense-related pathways against Colletotrichum acutatum in strawberry (Fragaria x ananassa)”; The 8th Plant Genomics European Meeting (Plant GEM); Lisboa – Portugal.

Gonzales-Plaza, J.J.; Sámchez-Sevilla, J.F.; Muñoz-Mérida A.; Dominguez M.C., Trelles O., Bjelaj A.; De la Rosa R.; Botella M.A., Valpuesta V., Beuzon C.R (2009); “Generation of genomic tools for teh study of Olive tree”; Plant & Animal Genome XVIII. Española de Genética; San Diego, California – USA.

Amil-Ruíz, F., Encinas-Villarejo, S., de los Santos, B., Muñoz-Mérida, A., Mercado, J. A., Trelles, O., Pliego-Alfaro, F., Romero, F., Muñoz-Blanco, J., Caballero, J. L (2010), “Distinctive transcriptome response of two strawberry (Fragaria x ananassa) cultivars to Colletotrichum acutatum infection”; IHC: International Horticultural Congress; Lisboa – Portugal.

M.J. Martín-Vázquez, M.A.Trelles and O.Trelles (2010); “Accurate evaluation of the efficacy of laser vein treatments”; Laser Europe 2010; Vila Seca, Tarragona – España.

Andrés Rodríguez, Oswaldo Trelles, Manuel Ujaldon (2010); “Using Graphics Processors for a High Performance Normalization of Gene Expressions”; ECCB 2010: 9th European Conference on Computational Biology; Belgium.

Maximiliano Garcia, Johan Karlsson and Oswaldo Trelles (2010); “Integrating Command Line Programs as Web Services in a Grid environment for Biomedical Tools”; ECCB 2010: 9th European Conference on Computational Biology; Belgium.

M. Garcia, J. Karlsson, O. Trelles (2010); “Web service catalogue for Biomedical GRID infrastructure” HealthGrid Conference 2010; Paris – Francia. Published: Stud Health Technol Inform. 2010;159:76-87. PMID: 20543428.

Johan Karlsson, Victoria Martín-Requena, Javier Ríos and Oswaldo Trelles (2010); “Workflow composition and enactment using jORCA”; 4th ISoLA Symposium. Int. Symposium on Leveraging Applications of Formal Methods, Verification and Validation; Creta Maris Hersonissos, Heraklion – Crete. Published: LNCS 6415, pp. 328–339, 2010.Springer-Verlag Berlin Heidelberg 2010.

J. Karlsson, M. Garcia, V. Martín-Requena, O. Trelles (2010); “Web-Service Based Analysis of Gene-expression Data for Cancer Patients”; 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation (IARWISOCI); Athens – Greece.

Blanco-Portales, R.; Moyano E.; Cumplido-Laso, G.; Medina-Puche, L.; Muñoz-Mérida, A.; Trelles, O.; Schwab, W.; Caballero, J. and Muñoz-Blanco, J (2010); “Using of a fruit derived ESTs microarray platform to discover new candidates genes with potential biotechnological roles in strawberry fruit development, ripening and senescence”, IHC: International Horticultural Congress; Lisboa –  Portugal.

Maximiliano García; Johan Karlsson and Oswaldo Trelles (2010); “Towards an unified Catalog for Biomedical Web Services”; 1st International Conference on Bioinformatics SOIBIO2010, of Sociedad Iberoamericana de Bioinformática (SoIBio); Termas de Chillán – Chile.

Alfredo Martínez, Paul M.K. Gordon , Christoph W. Sensen and Oswaldo Trelles (2010); “BioData-SF: Step beyond integration”; X Jornadas de Bioinformática; Málaga – España. Published: ISBN-978-84-614-4481-6. pp. 236-240.

Johan Karlsson, Maximiliano García and Oswaldo Trelles (2010); “Conceptual Study of Data Integration in Biomedicina”; X Jornadas de Bioinformática; Málaga – España. Published: ISBN-978-84-614-4481-6. pp. 255-257.

Javier Ríos, Noura Chelbat, Antonio Muñoz-Mérida, Victoria Martín-Requena, Jose Manuel Mateos-Durán, Hicham Benzekri, Günter Klambauer, Ulrich Bodenhofer, Andreas Mayr, Andreas Mitterecker, Sepp Hochreiter and Oswaldo Trelles (2010); “Collaborative action for the promotion of HPC applied to NGS”; X Jornadas de Bioinformática; Málaga – España. Published: ISBN-978-84-614-4481-6. pp. 290-291.

Jose Manuel Mateos, Alfredo Martinez, Oswaldo Trelles (2010); “MOWSERV 2: Friendly and extensible web platform for bioinformatics tools integration”; X Jornadas de Bioinformática; Málaga – España. Published: ISBN-978-84-614-4481-6. pp. 258-261.

Amil-Ruiz F., Muñoz-Mérida A., Trelles O., Muñoz-Blanco J., Caballero J L. (2010); “Transcriptomic analysis of two strawberry (Fragaria x ananassa) cultivars determines key genes in response to Colletotrichum acutatum infection”; X Jornadas de Bioinformática; Málaga – España. Published: ISBN-978-84-614-4481-6. pp. 216-218.

Antonio Muñoz-Mérida, Javier Ríos, Hicham Benzekri and Oswaldo Trelles (2010). “Statistical significance for NGS reads similarities”; X Jornadas de Bioinformática; Málaga – España. Published: ISBN-978-84-614-4481-6. pp. 81-84.

Victoria Martín-Requena, Javier Ríos and Oswaldo Trelles (2010); “jORCA and Magallanes sailing together towards Web Services Integration”; X Jornadas de Bioinformática; Málaga – España. Published: ISBN-978-84-614-4481-6. pp. 68-69.

Juan J. González-Plaza, Inmaculada Ortiz-Martín, Antonio Muñoz-Mérida, Oswaldo Trelles, Eduardo R. Bejarano, Victoriano Valpuesta, Carmen R Beuzón (2010); “A Plant Architecture Study in Olive Tree”; X Jornadas de Bioinformática; Málaga – España. Published: ISBN-978-84-614-4481-6. pp. 157-158.

Antonio Muñoz-Mérida, Juan J. González-Plaza, Inmaculada Ortiz-Martín, María C. Domínguez-García, Nieves Martín-Urdiroz, Conchi Díez-Muñoz, José F. Sánchez-Sevilla, Luis Rallo, Isabel Trujillo, Angjelina Belaj, Raúl De la Rosa, Oswaldo Trelles,Victoriano Valpuesta, Carmen R Beuzón (2010); “Search and Validation of Microsatellite Markers in Olive Tree for the Analysis of Agronomical Traits”; X Jornadas de Bioinformática; Málaga – España. Published: ISBN-978-84-614-4481-6. pp. 114-116.

Maria C. Dominguez-García, Juan J. González-Plaza, Antonio Muñoz-Mérida, Oswaldo Trelles, Angjelina Belaj, Raúl De la Rosa, Victoriano Valpuesta, Carmen R Beuzón (2010); “Generation of Genomic Tools in Olive Tree for the Analysis of Agronomical Traits”; X Jornadas de Bioinformática; Málaga – España. Published: ISBN-978-84-614-4481-6. pp. 272-274.

Mateos, JM; Rios J. and Trelles, O. (2010); “Genome parallel comparison in linear time and without memory limits”; XXI Jornadas de Paralelismo; Valencia – España.

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