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CONFERENCE CONTRIBUTIONS (2011-2016)

Mari Carmen García-López, Isabel Vidoy, Jaime Jiménez-Ruiz, Antonio Muñoz-Mérida, Ana Fernández-Ocaña, Raul de la Rosa, Juan Bautista Barroso, Francisco Navarro, Oswaldo Trelles, Carmen R. Beuzón, Araceli Barceló, Victoriano Valpuesta y Francisco Luque (2011); “Microarray analysis of the juvenile to adult transition in the shoot apex of Olea europaea L.”; Sociedad Española de Genética; Murcia – España.

Andrés Rodríguez, Oswaldo Trelles, Manuel Ujaldón (2011); “Using Graphics Processors for a High Performance Normalization of Gene Expressions”; IEEE International Conference on High Performance Computing and Communications; Banff, Alberta – Canada.

Antonio Muñoz-Mérida, Javier Rios, Hicham Benzekri, and Oswaldo Trelles (2011); “Behind the significance in NGS reads assembly”; Intelligent System for Molecular Biology; Viena – Austria.

Daniel Ramet, Juan Lago, Johan Karlsson, Juan Falgueras y Oswaldo Trelles (2011); “Mr-Cirrus: Implementación de Map-Reduce bajo MPI para la ejecución paralela de programas secuenciales”; XXII Jornadas de Paralelismo; Las Palmas de Gran Canaria – España.

García-López MC; Vidoy I; Jiménez-Ruiz, J; Muñoz Mérica A, Fernandez Ocaña A; de la Rosa R; Bautista Barroso J; Navarro F; Trelles O; beuzón CR; Barceló A; Valpuesta V; Luque F. (2011); “En el olivo los cambios en la expresión génica relacionados con el paso de árbol joven a adaulto se producen años antes de que se produzca la primera floración”; XXXVIII Congreso de la Sociedad Española de genética; Murcia – España.

J.J. González Plaza, A.Muñoz-Mérida, I. Ortiz-Martín, M.C. Domínguez-García; N. Martín-Urdioz, C.Diez-Muñoz, J.F. Sánchez-Sevilla, L.Rallo, I.Trujillo, A. Belaj, R.de la Rosa, O.Trelles, V.Valpuesta, C.R. Beuzón (2011); “Identification of molecular markers in olive tree for the análisis of agronomical traits”; 4th Internacional Conference for Olive Tree and Olive Products; Shania, Creta – Grecia.

Antonio M. Mérida, Gonzalo M. Claros, Oswaldo Trelles and Antonio J. Perez (2012); “sma3s: a 3 stages software for sequences make sense”; XI Jornadas de Bioinformática / XI Spanish Bioinformatics Workshop; Barcelona – España.

Alfredo Martínez-Lopez and Oswaldo Trelles (2012); “MOWSERV 2: the multi-repository version of the INB integrated client”; XI Jornadas de Bioinformática / XI Spanish Bioinformatics Workshop; Barcelona – España.

Hicham Benzekri, Antonio Muñoz-Mérida, Gonzalo Claros Díaz and Oswaldo Trelles (2012); “Rapid and efficient contigs mapping and ordering with ICMapper”; XI Jornadas de Bioinformática / XI Spanish Bioinformatics Workshop; Barcelona – España.

Torrreño O., Ramet D., Karlsson T.J.M. , Lago J. , Bodenhofer U. and Trelles O. (2012); “Is Cloud Computing an attractive alternative for Bioinformatics?; XI Jornadas de Bioinformática / XI Spanish Bioinformatics Workshop; Barcelona – España.

S. Ramirez, J. Karlsson, O. Trelles (2012); “MAPI: towards the integrated exploitation of bioinformatics Web Services”; XI Jornadas de Bioinformática / XI Spanish Bioinformatics Workshop; Barcelona – España.

Johan Karlsson, Oscar Torreño, Oswaldo Trelles (2012); “jORCA – Jumping to the Cloud”; XI Jornadas de Bioinformática / XI Spanish Bioinformatics Workshop; Barcelona – España.

Rodríguez-Moreno A, Cano-Castillo M, Goikoetxea MJ, Sanz ML and Trelles O (2012); “PEANUT: A comprehensive tool for protein expression analysis”; XI Jornadas de Bioinformática / XI Spanish Bioinformatics Workshop; Barcelona – España.

J. Lago; D. Ramet; O. Torreño, J. Karlsson; J.Falgueras; N. Chelbat; M. Krieger and O.Trelles (2012); “Mr.Cirrus: A Map-Reduce approach for High level Cloud Computing”; ISCB Latin America 2012 Conference on Bioinformatics; Santiago de Chile – Chile

Sergio Ramírez; Javier Rios, Oliverio Vega and Oswaldo Trelles (2008); “Presential-Like e-learning tool for teaching bioinformatics”, VIII Jornadas de Bioinformática; Valencia – España.

J. Karlsson, Daniel Ramet, O. Torreño, Günter Klambauer, M.Cano and O. Trelles (2012); “Enabling Large-Scale Bioinformatics Data Analysis with Cloud Computing”; International Workshop on Heterogeneous Architectures and Computing (10th IEEE International Symposium on Parallel and Distributed Processing with Applications); Leganes – Madrid.

María de la O Leyva-Pérez; Antonio Valverde; Jaime Jiménez-Ruiz ; Antonio Muñoz-Merida; Raquel Valderrama; Oswaldo Trelles; Juan Bautista Barroso; Jesús Mercado and Francisco Luque; “Cold response in Olive tree; A RNAseq Study”; International Workshop on Wheat Genomic Selection; Helsinki – Finland.

Tor Johan Mikael Karlsson, ´ Oscar Torreño Tirado, Daniel Ramet,Juan Lago, Juan Falgueras Cano, Noura Chelbat, and Oswaldo Trelles (2013); “Running Legacy Bioinformatics Applications with Cloud Computing Resources”; IWANN 2013; Tenerife – España. Published: Part II, LNCS 7903, pp. 200–207, 2013. Springer-Verlag Berlin Heidelberg 2013.

Andrés Rodríguez Moreno, Óscar Torreño Tirado, and Oswaldo Trelles Salazar (2013); “Out of Core Computation of HSPs for Large Biological Sequences”; IWANN 2013; Tenerife – España. Published: Part II, LNCS 7903, pp. 200–207, 2013. Springer-Verlag Berlin Heidelberg 2013.

María de la O Leyva-Pérez, Antonio Valverde, Jaime Jiménez-Ruiz, Antonio Muñoz-Merida, Oswaldo Trelles, Juan Bautista Barroso, Jesús Mercado y Francisco Luque (2013); “La respuesta a estrés por frío en el olivo (Olea europea L.) se produce mediante cambios transitorios de la expresión génica a la vez que por cambios adaptativos estables durante la persistencia del estrés”; XXXIX Congreso de la Sociedad Española de Genética; Gerona – España.

Rodríguez-Moreno Andrés, Cano-Castillo Miriam, Martínez Aranguren Ruben; Lizaso Bacaicoa Maite; Sanz Larruga María Luisa y Trelles, Oswaldo (2013); “Validación del software PENAUT para el análisis de matrices de proteínas”; Simposio Internacional de Alergia a Himenópteros; Granada – España.

Sergio Díaz, Roberto Trelles, Johan Karlsson, Juan Falgueras, Oswaldo Trelles (2013); “Mobile platforms for universal access to biomedical and bioinformatics apps”; 4to Congreso Argentino de Bioinformática y Biología Computacional y 4ta Conferencia Internacional de la Sociedad Iberoamericana de Bioinformática (SoIBio); Rosario – Argentina.

Jose A. Arjona Medina, Oscar Torreño Tirado and Oswaldo Trelles (2013); “Digital Signal Processing applied to the identification of Evolutionary Events”; 4to Congreso Argentino de Bioinformática y Biología Computacional y 4ta Conferencia Internacional de la Sociedad Iberoamericana de Bioinformática (SoIBio); Rosario – Argentina.

Roberto Souto; Carla Osthoff; Ana Tereza Vasconcelos; Douglas Augusto; Pedro L. Silva Dias; Andres Rodriguez; Oswaldo Trelles; Manuel Ujaldon (2013); “Applying GPU Dynamic Parallelism for a High Performance Normalization of Gene Expressions”; 4th Workshop on Applications for Multi-Core Architectures and  25th International Symposium on Computer Architecture and High Performance Computing; Porto de Galinhas – Brasil.

Paul Heinzlreiter, James Perkins, Oscar Torreño Tirado, Johan Karlsson, Andreas Mitterecker, Miguel Blanca and Oswaldo Trelles (2014); “A Cloud-based GWAS Analysis pipeline for Clinical researchers”; 4th International Conference on Cloud Computing and Services Science; Barcelona – España.

Oscar Torreño Tirado and Oswaldo Trelles (2014); “Easily registering bioinformatics services metadata”; The 13th European Conference on Computational Biology Methods and technologies for Computational Biology; Strasbourg – France.

Gonzales-Plaza, J.J.; Sámchez-Sevilla, J.F.; Muñoz-Mérida A.; Dominguez M.C., Trelles O., Bjelaj A.; De la Rosa R.; Botella M.A., Valpuesta V., Beuzon C.R (2009); “Generation of genomic tools for teh study of Olive tree”; Plant & Animal Genome XVIII. Española de Genética; San Diego, California – USA.

Tor Johan Mikael Karlsson, Óscar Torreño Tirado and Oswaldo Trelles (2014); “jORCA: Jumping to the Cloud”; The 13th European Conference on Computational Biology Methods and technologies for Computational Biology; Strasbourg – France.

Jose Arjona-Medina, Óscar Torreño Tirado and Oswaldo Trelles (2014); “Software for featuring genome evolution”; The 13th European Conference on Computational Biology Methods and technologies for Computational Biology; Strasbourg – France.

Iris Leitner and Oswaldo Trelles (2014); “Intuitive library for efficient access of compressed genome sequences”; The 13th European Conference on Computational Biology Methods and technologies for Computational Biology; Strasbourg – France.

Oscar Torreno, Johan Karlsson, Paul Heinzlreiter and Oswaldo Trelles (2014); “Running workflows in the cloud”; Jornadas Sarteco (Jornadas de paralelismo 2014); Valladolid – España.

Jose A. Arjona-Medina, Oscar Torreño, Noura Chelbat and Oswaldo Trelles (2014); “Experimental Study of Local Alignment Distributions in the Comparison of Large Genomic Sequences”; ISCB-Latin America x-Meeting on Bioinformatics with BSB & SoiBio; Belo Horizonte – Brazil.

Noura Chelbat, Sergio Díaz, Johan Karlsson, Oswaldo Trelles, Juan  Falgueras (2014); “Usability tests on bioinformatics mobile applications”; Jornadas de Bioinformatica (JBI); Sevilla – España.

Díaz del pino, O. Torreño, J. Karlsson, O.Trelles, J. Falgueras (2014); ”Bioinformatics with mobile devices”; Jornadas de Bioinformatica (JBI); Sevilla – España.

Alex Upton, Priscill Orue and Oswaldo Trelles (2014); “Accelerating GWAS Epistatic interaction analysis methods” Jornadas de Bioinformatica (JBI); Sevilla – España.

Alex Upton, Oswaldo Trelles and James R.Perkins (2015); “Graph theoretical analysis of Clarkson disease GWAS epistatic interactions”; International conference on Computer Science; Reykjavik.

Sergio Díaz Del Pino, Tor Johan Mikael Karlsson, Juan Falgueras Cano, and Oswaldo Trelles (2015); “Mobile Access to On-line Analytic Bioinformatics Tools”; 3rd International Work-Conference on Bioinformatics and Biomedical Engineering; Granada – España. Published: IWBBIO 2015, Part II, LNCS 9044, pp. 555–565, 2015. Springer International Publishing Switzerland 2015.

O. Torreño, M. Krieger, P. Heinzlreiter, O.Trelles (2015); “Pairwise genome comparison workflow in the Cloud using Galaxy”; International conference on Computer Science; Reykjavik.

Alex Upton, Oswaldo Trelles (2015); “Protein interaction network analysis of allergic sensititation”; Conference on Proteins and Proteomics; Reston, Washington – USA.

Oscar Torreño and Oswaldo Trelles (2015); “Parallel implementation of GECKO program using MPI”; IEEE ISPA Workshop: PBio 2015: Third International Workshop on Parallelism in Bioinformatics; Helsinki – Finland.

Alex Upton, Oswaldo Trelles, Ming Ta Michael Lee, Lieh-Bang Liou, Miguel Blanca, Jose Antonio Cornejo-Garcia, James Perkins (2015); “Epistatic Analysis of NSAIDs Hypersensitivity using High Performance Computing”; Immunoinformatics & Immune-computation; Taormina – Italy.

Oscar Torreno; Johan Karlsson; Alex Upton; Michael Krieger and Oswaldo Trelles (2015); “Integrating Galaxy in the Mr.SymBioMath Cloud Infrastructure”; Galaxy Community Conference; Norwich – UK.

Oscar Torreño and Oswaldo Trelles; “Auto-scaling strategy for OpenStack cloud resources managed by TORQUE”; Jornadas de Paralelismo 2015. (Jornadas Sarteco); Córdoba – España.

Maria Luiza Mondelli, Oscar Torreño, Kary A. C. S. Ocaña, Marta Mattoso, Michael Wilde, Ana T. Vasconcellos, Oswaldo Trelles, Luiz M. R. Gadelha Jr. (2015); “SwiftGECKO: a provenance-enabled parallel comparative genomics workflow”; X-Meeting 2015 – 11th International Conference of th AB3C + Brazilian Symposium of Bioinformatics; Sao Paulo.

James Richard Perkins, Jose Antonio Cornejo García1, Oswaldo Trelles, Inmaculada Doña, Esther Barrionuevo, María Salas, María Auxiliadora, Guerrero, Miguel Blanca, Alex Upton (2016); “Epistasis Approaches To Identify Novel Genes Potentially Involved In NSAIDs Hypersensitivity”; 7th Drug Hypersensitivity Meeting; Málaga – España.

S.Diaz-del-Pino, J.Arjona, O.Torreno, S.Benavides, and O.Trelles (2016); “GECKO-MGV: Evolution Events driven tool for enhanced visual analysis of multi-genome comparisons”; International Work-conference on Bioinformatics and Biomedica Engineering; Granada – España.

Fernando Moreno, Oscar Torreno, Sergio Diaz-del-Pino, Jose Arjona, , Samuel Benavides, and OswaldoTrelles (2016); “Adapting GECKO for metagenomics studies”; International Work-conference on Bioinformatics and Biomedica Engineering; Granada – España.

Esteban Pérez-Wohlfeil, Francielle Maboni, José Arjona-Medina, Óscar Torreño-Tirado, Arnaldo Zaha, Eugenia Ulzurrun, Ana-Tereza Ribeiro de Vasconcelos, Oswaldo Trelles (2016); “Computational Workflow for the fine-grained analysis of metagenomics samples”; SOiBio: International Conference 2016 on “Bioinformatics and Computational Biology for Innovative Genomics”; Mexico.

J. Arjona-Medina, O. Trelles; “Refining borders of Computational Synteny Blocks using repetitions”; SOiBio: International Conference 2016 on “Bioinformatics and Computational Biology for Innovative Genomics”; Mexico

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