Conference Contributions (1994-2006)

CONFERENCE CONTRIBUTIONS (1994-2006)

Oswaldo Trelles Salazar; Emilio L. Zapata Y José Maria Carazo (1994); “Mapping Strategies for Sequential Sequence Comparison Algorithms on LAN-based Message Passing Architectures”; High Performace Computing and Networking (HPCN-Europe’94); Munich – Alemania. Published: Proceedings, Volume I: Applications. Lecture Notes in Computer Science 796 Springer 1994, ISBN 3-540-57980-X.

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F.J. Marin; O. Trelles Salazar y F. Sandoval (1994); “Genetic Algorithms on LAN-Message Passing Architectures using PVM:  Application to the Routing Problem”; Parallel Program Solving from Nature (3th PPSN’94); Jerusalem – Israel.

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Guillermo Thode, Juan Antonio García-Ranea, José Maria Alvárez, Oswaldo Trelles y Juan Jiménez (1994); “Un nuevo procedimiento de análisis para detectar regiones funcionales en secuencias proteicas”; XXIX Jornadas de Genética Luso-Españolas; Lleida – España.

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O. Trelles Salazar, E.L. Zapata, Andrew F. W. Coulson; J.F. Collins y J.M. Carazo (1994); “Exhaustive sequence database searching on the Cray-T3D”; Genes, Proteins and Computers; Chester – U.K.

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Thode G.; Bejarano E.R.; Ranea J.A.G.; Alvarez J.M.; Trelles O. y Jiménez J. (1994); “A new computer program to analyse protein sequences allows the localisation of interesting sites in the sequence of geminivirus genomes”; 1st Internatonial Symposium on Geminiviruses; Almeria – Spain.

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Andrés Rodriguez, Enrique Vigueras, Pablo Hernández, J. Bernardo Schvartzman y Oswaldo Trelles (1995); “Modelado del Análisis de la Replicación del DNA por Electroferesis Bidimensional en Geles de Agarosa”; I Jornadas de Informática; Tenerife – España.

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M.A.Trelles; J.Coates; J. Rigau; O.Trelles y J.L. Cisneros (1995); “Ultrapulse laser resurfacing of wrinkles laboratory and clinics”; International Skin Peeling Symposium; Cannes – France.

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M.A.Trelles,  O.Trelles y L.F. Romero (1995); “New approach of CO2 laser use in plastic & dermo-cosmetic surgery”; BiOS-Europe’95; Barcelona – España. Published: Proceedings of Medical Applications of Lasers III; SPIE vol.2623 pp.52-61.

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L.F. Romero, A. Rodríguez, M.A.Trelles, y O.Trelles (1995); “Computational demands for laser/tissue interaction modelling”; BiOS-Europe’95; Barcelona – España.

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M.A.Trelles; O.Trelles;  A. Rodríguez; J. Rigau, J.Coates (1995); “¿Qué hay de nuevo en láser-cirugía?”; XI  Nacional de la Sociedad Española de Medicina Estética; Barcelona – España.

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Oswaldo Trelles (1996); “Coarse-Grained Parallel Solutions for Sequence Analysis”; First Workshop on High Performance Computing in BioMedicine; Santiago de Compostela – España.

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O.Trelles;  A. Rodríguez; L.F. Romero; M.A.Trelles (1996); “Herramientas Computacionales de Visualización de la Acción del Láser sobre la Piel”; XXXI  de la Soc. Española de Cirugía Plástica, Reparadora y Estética; Madrid – España.

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Carazo, J.M.; de la Fraga, L.G.; Sanjurjo, J.;García, I.; Roca , J.; Trelles, O. y Zapata, E.L (1996); “Problemas Grand Challenge en Biología y BioMedicina, su planteamiento y nuestros enfoques actuales”; VII Jornadas de Paralelismo; Santiago de Compostela – España.

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L.F. Romero, A. Rodríguez, A. Muñoz C.,  M.A.Trelles, E.L.Zapata y O.Trelles (1996); “Efficient Computational Parallel Solutions for Laser/Tissue Interaction Modelling”; BIOS-Europe’96 ; Viena – Austria.

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M.A.Trelles, J.Rigau, O.R. Trelles (1996); “Laser Resurfacing.Correlación clínica con el laboratorio”; Congreso XXXI  de la Soc. Española de Cirugía Plástica, Reparadora y Estética; Madrid – España.

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M.A. Trelles, J. Rigau, O.R. Trelles  (1996); “Tratamiento del envejecimiento cutáneo por láser, Evidencias clínicas”; Congreso XXXI  de la Soc. Española de Cirugía Plástica, Reparadora y Estética; Madrid – España.

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M.A.Trelles, A. Rodríguez, O.R. Trelles y J.Rigau (1996); “Skin Rejuvenation by Laser”; Laser Congress: At the dawn of the third millenium; Athenas – Greek.

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M.A.Trelles, O.R. Trelles y L.F. Romero (1997); “Resurfacing: le Laboratoire et la Clinique”; XVI Congrès de la Société Française des Lasers Médicaux; France.

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Rodríguez, A., Fraga, L.G. de la, Zapata, E.L., Carazo, J.M. y Trelles, O. (1996); “Paralelismo de Tareas en el Análisis de Secuencias Biológicas”; VIII Jornadas de Paralelismo; Cáceres – España.

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Francisca Sánchez-Jiménez, Antonio Joaquin Ruiz-Chica, Ana R.Quesada, Miguel Angel Medina Torres, Francisco M. Canovas, José Luis Urdiales, Andrés Rodríguez y Oswaldo Trelles (1996); “Docencia y BioComputación: la experiencia de un Bienio”; EDUTEC’97: Creación de Materiales para la Innovación Educativa con nuevas Tecnologías; Málaga – España.

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Enrique Viguera Minguez; Pablo Hernández Valenzuela; Olivier Hyrien ; Andrés Rodríguez Moreno; Oswaldo Trelles Salazar; Bernardo Schvartzman Blinder (1997); “A computer model for the analysis of dna replication intermediates by 2d-agarose gel electrophoresis: replication analysis of tyhe shuttle vector yrp7′ in escherichia coli, sacharomyces cerevisiae and xenopus eggs extracts”; Eucaryotic DNA Replication – 236; Cold Spring Harbor.

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Rodríguez A.; de la Fraga, L.G.; Zapata, E.L; Carazo, J.M. y Trelles, O.  (1998); “Biological Sequence Analysis on Distributed-Shared Memory Multiprocessors”; 6th EUROMICRO Workshop on Parallel and distributed Processing; Madrid – España.

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Andrés Rodriguez, David Shotton, Nicolas Guil y Oswaldo Trelles (2000); “Automatic Tracking of Moving Bacterial Cells in Scientific Videos”; RIAO 2000, 6th Conference on Content-Based multimedia information access College de France; Paris – Francia.

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Andrés Rodriguez, David Shotton, Oswaldo Trelles y Nicolas Guil (2000); “Automatic Feature Extraction in Wound Healing Videos”; RIAO 2000, 6th Conference on “Content-Based multimedia information access; College de France; Paris – Francia.

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Shotton,D.M.; Rodriguez, A. y Trelles O. (2000); “Object Tracking and Event Recognition in Biological Microscopy Videos”; 15th International conference on Pattern Recognition: ICPR 2000; Barcelona – España. Published: Applications, robotics, systems and architectures; vol (4); pp.226-229.

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Rodriguez, A.;  Pérez-Pulido, A:, Thode,G.; Carazo,JM. y  Trelles,O. (2000); “Mining Low-level similarity signals from sequence databases”; High Performance Computers Applied to BioInformatics and Computational Biology. 4th Conference on Systematics, cybernetics and Informatics, SCI’2000; Orlando, Florida – USA.

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Javier Herrero, Nieves Pola, Olga M. Pérez, Oswaldo Trelles y Joaquin Dopazo (2000); “Using the Self Organising Tree Algorithm (SOTA), an unsupervised hierarchical neural network, to simultaneously classify and align protein sequences”; I Jornadas de Bioinformática; Cartagena – España.

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Rodriguez,A.; Shotton,D-M; Guil,N. ; Trelles,O. (2000); “Automatic Analysis of Biological Scientific Videos”; I Jornadas de Bioinformática; Cartagena – España.

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Antonio Pérez-Pulido, Guillermo Thode, Andrés Rodriguez y Oswaldo Trelles (2000); “Estrategia para la asignación funcional de patrones peptídicos”; I Jornadas de Bioinformática; Cartagena – España.

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Rodríguez, A., Carazo, J.M. y Trelles O.  (2001); “Aplicación de extracción de reglas asociativas a bases de datos biológicas”; II Jornadas de Bioinformática; Torremolinos, Málaga – España. Published: ISBN 84-699-5139-4.

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Perez, A.J., Thode, G. y Trelles, O. (2001); “Optimización de la asignación funcional de proteinas en base a los motivos del campo FT de la base de datos swissprot”; II Jornadas de Bioinformática; Torremolinos, Málaga – España. Published: ISBN 84-699-5139-4.

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J.Alvarez, A.J.Pérez, G.Thode, O.Trelles y M.Blanca (2001); “Utilización del Algoritmo ANAGRAM en la definición de epítopos T en la cadena de la heteroglobina, un alergeno del Hamster Sirio”; II Jornadas de Bioinformática; Torremolinos, Málaga – España. Published: ISBN 84-699-5139-4.

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García de la Nava, A. Rodríguez y O.Trelles (2001); “Representación integral bi-dimensional de estructuras 3D”; II Jornadas de Bioinformática; Torremolinos, Málaga – España. Published: ISBN 84-699-5139-4.

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J.M. Fernández, M.M Roldán, O.Trelles y J.Aldana (2001); “Arquitectura para integrar el conocimiento biológico: una tarea en marcha”; II Jornadas de Bioinformática; Torremolinos, Málaga – España. Published: ISBN 84-699-5139-4.

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A.Rodríguez, N. Jimémez, J.M.Carazo y O.Trelles (2001); “Comparación de estructuras 3D considerando los entornos de los aminoácidos”; II Jornadas de Bioinformática; Torremolinos, Málaga – España. Published: ISBN 84-699-5139-4.

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Pascual, A.; Pérez, O., Trelles O.; Pascual-Marqui, R. y Carazo, J.M. (2001); “Nuevas redes neuronales auto-organizativas para el análisis y agrupamiento de patrones de expresión génica”;; II Jornadas de Bioinformática; Torremolinos, Málaga – España. Published: ISBN 84-699-5139-4.

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O.Trelles (2001); “Extracción Automática de Conocimiento en Bases de Datos Biológicas”; XXIV  Sociedad Española de Bioquímica y Biología Molecular; Valencia – España.

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Eduardo Ramírez, Per Djursvoll, Bjarne Meidell, Jan Erik Vold, Andrés Rodríguez, and Oswaldo Trelles (2001); “The use of Internet, Video and scanned 3D objects for our Natural History and Science Museums”; 19th International Conference of ICOM (International Council of Museums); Barcelona – España.

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Olga Pérez, Jorge García de la Nava, Andrés Rodríguez, Oswaldo Trelles (2001); “Optimización de clustering de perfiles de expresión génica”; XII Jornadas de Paralelismo; Valencia – España.

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Olga M. Perez, F. J. Marin, and O. Trelles (2001); “Improving Biological Sequence Property Distances by using a Genetic Algorithm”; IWANN-2001, 6th. International Work Conference on Artificial and Natural Neural Networks. Granada – España. Published: LNCS 2085, vol(2), pp. 539-546.

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41. Jiménez-Lozano N, Rodríguez A, Chagoyen M., Pascual-Montano A, Trelles O, Carazo JM (2002); “Incorporation of biochemical knowledge in Geometric Hashing: statistical assessment”; Intelligent Systems for Molecular Biology; Edmonton – Canada.

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Pierre Renault, Eric Guédon, Charlotte Barrière, Oscar Kuipers, Jan Kok, Sacha van Hijum, Philippe Bessières, Sébastien Girard, Oswaldo Trelles, Jorge Garcia de la Nava, Olga Perez, Eric Johansen, Kim Ib Soerensen, Anette Wind, François Gendre, Jerome Mengaud, Nathalie Goupil-Feuillerat, Celine Gobert..  (2002); “Express-Fingerprints: a European consortium for the safety evaluation of new strains, including GMOs, of potential application in bio-processed food”; Lactic Acid Bacteria Symposium; Neederlands.

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J.F. Aldana, M.M. Roldán, N. Moreno, M. Aguilera, I. Navas, A.J.Pérez, J. García de la Nava, and O. Trelles (2002); “Integración de bases de datos biológicas sobre la plataforma .NET”; III Jornadas de Bioinformática; Salamanca – España.

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Pérez, A.J, Thode, G., Rodríguez, A. and Trelles O. (2002); “Asignación funcional de proteínas utilizando una base de datos de keywords jerarquizadas”; III Jornadas de Bioinformática; Salamanca – España.

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Oswaldo Trelles, Alberto Pascual-Montano, Jorge García de la Nava Ruiz, Jesús  Cuenca, Daniel Franco Santaella, José-María Carazo (2003); “Engene: A gene expression data processing and exploratory data analysis tool”; CNIO Meeting “DNA arrays 2002”; Madrid – España.

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M. J. Martín-Vázquez, M.A. Trelles y  O. Trelles (2003); “Computational Evaluation of Tissue characteristics in Laser Treatment of Dermatological and Aesthetic Conditions”; 7th World Multiconference on Systemics, Cybernetics and Informatics (SCI 2003); Orlando – USA.

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Jorge García de la Nava, Sacha van Hijum, Pedro de Alarcón y Oswaldo  Trelles (2003); “Improving the quality of gene expression data by reducing quantization and  saturation effects”; DNA-arrays meeting; CNIO, Centro Nacional de Investigaciones Oncológicas, Madrid – España.

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Olga M. Pérez, Manuel Hidalgo-Conde, Francisco J. Marín and Oswaldo Trelles (2003); “Weighting and Feature Selection on Gene-Expression data by the use of Genetic Algorithms”; IWANN-2003, 7th. International Work Conference on Artificial and Natural Neural Networks; Menorca – Spain. Published: LNCS 2687; pp.377-384.

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Carmona-Sáez, P., Chagoyen, M., Rodríguez, A., Trelles, O., Carazo, JM., Pascual-Montano, A. (2003); “Discovering biological knowledge from gene expression using association rules”; DNA-arrays meeting; CNIO, Centro Nacional de Investigaciones Oncológicas; Madrid – España.

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Mario A. Trelles, Manuel Jesús Martín-Vázquez and Oswaldo Trelles (2003); “Objective follow-up by computational evaluation of tissue changes after light Treatment”; Laser in Medical Science: Joint International Laser Conference; Edinburgh – Scotland.

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Andrés Rodríguez, Antonio Ortega-Álvaro , Gerardo Bandera , Alejandro Sola , Juan Antonio Micó  and Oswaldo Trelles (2003); “Semantic content recognition and organization in mice behavioural testing video”; The 3rd IASTED. Int. Conf. Visualization, Imaging and Image; Processing-VIIP; Benalmádena – España. Published:. ISBN:0-88986-382-2; ISNN: 1482-7921. pp.1088-1093.

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Nieves Pola-Gallego, David López Cordero, Andrés Rodríguez y Oswaldo Trelles (2003); “Paralelización de problemas de clasificación jerárquica usando planificación basada en grafos de dependencias y prioridades multinivel”; XIV Jornadas de Paralelismo; Getafe, Madrid – España.

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Jorge García de la Nava y Oswaldo Trelles (2003); “Non-Uniform quantization for improving microarray scanning quality”; IV Jornadas de Bioinformática y Biología Computacional (4th Symposium on Bioinformatics and Computational Biology); A Coruña – España. Published: ISBN 84-9749-112-2.

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P. Carmona-Sáez, M. Chagoyen, A. Rodriguez, O. Trelles, J.M. Carazo and A. Pascual-Montano (2003); “Discovering biological knowledge from gene expression data using association rules”;  IIth International Conference on Intelligent Systems for Molecular Biology; Brisbane – Australia.

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N. Moreno-Vergara, J. F. Aldana, P. A. De Alarcón and  O. Trelles (2003); “Distance Learning platform for bioinformatics”; Second International Conference on Multimedia and Information & Communication Technologies in Education (m-ICTE 2003); Badajoz – España.

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Carmona-Sáez, M. Chagoyen, A. Rodríguez, O. Trelles, P.A. de Alarcón, J.M. Carazo, A. Pascual-Montano (2003); “Linking gene characteristics to expression data in microarray experiments: a datamining approach”; IV Jornadas de Bioinformática y Biología Computacional (4th Symposium on Bioinformatics and Computational Biology); A Coruña – España. Published: ISBN 84-9749-112-2.

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Antonio J. Pérez, Guillermo Thode, Oswaldo Trelles   (2003); “AnaGram: Un servidor web para la asignación de función a proteínas”; Congreso de la Sociedad Española de Genética; San Lorenzo del Escorial – España.

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J.F. Aldana, M. Roldán, I. Navas, A.J.Pérez, and O.Trelles (2004); “Integrating Biological Data Sources and Data Analysis Tools through Mediators”; 19th ACM Symposium on Applied Computing (SAC 2004); Nicosia – Cyprus.

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J.F. Aldana, M.Hidalgo-Conde, I. Navas, M.M.Roldán, P.A. de Alarcón and O.Trelles (2004); “An Open Architecture for the Dynamic Integration of Biological Data Sources”; International Conference on Computing, Communications and Control Technologies; Austin – USA. Published: ISBN 980-6560-17-5. pp. 239-244.

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M.J. Martín-Vázquez, M.A.Trelles and O.Trelles (2004); “Computer assisted system for the objective assessment of cutaneous photo-therapy”; XII  de la Sociedad Española de Láser Médico Quirúrgico; Marbella – España.

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J Veintimilla, V Espigares,  MA. Trelles, O Trelles, L F Romero (2004); “Integrated computational system for laser-tissue interaction modelling”; XII  de la Sociedad Española de Láser Médico Quirúrgico; Marbella – España.

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Hugo Rosales, José Aldana, Rafael Asenjo y Oswaldo Trelles (2004); “Adecuación de un modelo de enseñanza superior en modelo de enseñanza virtual”; LatinEduca2004.com: Virtual Latinoamericano de Educación a Distancia; Biblioteca digital de la Organización de Estados Iberoamericanos para la Educación, la Ciencia y la Cultura; OEA.

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Manuel Hidalgo Conde, Jorge García de la Nava, Andrés Rodríguez y Oswaldo Trelles (2004); “Planificación adaptativa en entornos GRID”; XV Jornadas de Paralelismo (Computación de Altas Prestaciones); Almería – España.

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Andrés Rodríguez, Antonio Ortega-Álvaro, Juan Antonio Micó y Oswaldo Trelles (2004); “Automatic tracking analysis in Morris water maze biomedical videos”; 4th IASTED International Conference: Visualization, Imaging and Image Processing; Marbella – Spain. Published: Processing (ISBN 0-88986-454-3; ISSN:1482-7921) pp. 647-652.

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Mario A. Trelles; Jorge O. Veintimilla Alcas; Oswaldo Trelles; Luis Felipe Romero Gómez; Víctor Espigares Martín (2004); “Simulación en tiempo real de la acción del láser sobre tejidos vivos”; XV Jornadas de Paralelismo; Almería – España.

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P. Carmona-Sáez, M. Chagoyen, A. Rodríguez, O. Trelles, J.M. Carazo and A.Pascual-Montano.  (2004); “Integrating GO annotations with Expression Data to Analyze Microarray Experiments”; Proceedings of the ECAI 2004 Workshop on  Data Mining in Functional Genomics and Proteomics: Current Trends and Future Directions; Valencia – España.

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Aldana, José F.; Hidalgo-Conde, Manuel; Navas, Ismael; Roldán, María del Mar and Trelles, Oswaldo (2005); “Bio-Broker: A biological data and services mediator system”; IADIS, International Conference Applied Computing 2005; Algarve – Portugal. Published: ISBN: 972-99353-6-X. Vol. 1. pp. 527-534.

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Manuel Hidalgo Conde, Andrés Rodríguez, Sergio Ramírez and Oswaldo Trelles (2005); “Adaptive Task Scheduling in Computational GRID environments”; European GRID Conference 2005; Amsterdan – Holland.

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L. F. Romero, M. A. Trelles, O. (2005); “Real-time simulation for laser–tissue interaction model”; Parallel Computing 2005; Málaga – España.

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S. Ramírez; E. de Andrés, I. Navas-Delgado, A.J. Pérez, J. Aldana, O. Trelles (2005); “Services Integration and Task-scheduling in Bioinformatics Grids”; Parallel Computing  2005; Málaga – España.

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Sergio Ramírez, Antonio J. Pérez, José M. Fernández, Román Roset, Enrique de Andrés, Oswaldo Trelles  (2005); “Extending the bioMOBY protocol at the INB”; European Conference on Computational Biology (ECCB05); Madrid – España.

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Hugo Rosales; Ismael del Aguila and Oswaldo Trelles (2006); “Synchronous Distance Learning Platform: School goes Home in Haemophilia”; XXVII International Congress of the World Federation of Hemophilia; Vancouver – Canada.

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Ismael Navas-Delgado, Jose F. Aldana-Montes and Oswaldo Trelles (2006); “Distributed Execution of Workflows”; ICCS 2006: 6th International Conference; Reading – UK. Published: Lecture Notes in Computer Science. Springer Berlin / Heidelberg ISSN: 0302-9743; Volume 3993 / 2006 Proceedings, Part III pp. 936 – 939. Editors:  Vassil N. Alexandrov, Geert Dick van Albada, Peter M.A. Sloot, Jack Dongarra. ISBN: 3-540-34383-0.

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Ismael Navas-Delgado, Antonio J. Pérez, Jose F. Aldana-Montes and Oswaldo Trelles (2006); “Distributed Execution of Workflows in the INB”; 3rd International Workshop on Data Integration in the Life Sciences 2006 (DILS’06); Hinxton – UK.

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Fernández-Santa-Cruz, Raúl; Karlsson, Johan; Aldana-Montes, Jose F.; Trelles; Oswaldo (2006); “Enhanced Functionalities for Workflow Management”. VII Spanish Bioinformatics Symposium; Zaragoza – España.

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Ramírez, Sergio; Karlsson, Johan; Rodríguez, José Manuel; Royo; Romina and Trelles, Oswaldo (2006); “Mirroring BioMOBY services; VII Spanish Bioinformatics Symposium; Zaragoza – España.

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García-Díez Federico, García-Oliver Max, Sola-Vázquez Alejandro, Trelles Oswaldo (2006); “From Molecules to Cancer Diagnosis: An European Biomedical Grid Infrastructure”; VII Spanish Bioinformatics Symposium; Zaragoza – España.

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Rojano-Muñoz, Mª del Mar; Aldana-Montes, José F.; Trilles, Oswaldo and Claros-Díaz, M. Gonzalo (2006); “Taxonomy-Based Enhanced Service Location for the MOWServ Client”; VII Spanish Bioinformatics Symposium; Zaragoza – España.

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Mérida, Antonio M.; Perkins, James R.; Pérez, Antonio J.; Thode,  Guillermo; Bejarano, Eduardo R.; Trelles, Oswaldo; Viguera, Enrique (2006); “semirna: searching for microRNAs against nucleotide sequences”; VII Spanish Bioinformatics Symposium; Zaragoza – España.

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Pérez, Antonio J.; Viguera, Enrique; Royo, Romina; Trelles, Oswaldo (2006); “3D-structure prediction workflow using hierarchical databases”; VII Spanish Bioinformatics Symposium; Zaragoza – España.

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Sacha A.F.T van Hijum, Victoria Martin R., Richard J.S. Barends, Aldert Zomer, harma A. Karsens, Oswaldo Trelles, Jan Kok and Oscar Kuipers (2006); “Supervised Lowess normalization of cDNA microarray data derived from non-isogenic strains”; VII Spanish Bioinformatics Symposium; Zaragoza – España.

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Oswaldo Trelles (2006); “Bioinformatics methods, tools and Challenges in Post-Genomics Research”; ITAB Pre-conference Workshop: ICT Technologies for Cancer Research and Management in the Post-Genomic Era: Status and Challenges; Ioannina – Grece (invited speech).

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Oswaldo Trelles (2006); “Integrated Bioinformatics in the ESP-SOL Project”; First Annual Meeting of the Spanish Solanaceae Research Community; Valencia – España (invited speech).

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